Information for 3-TGGAAWTTAAAAKRCT (Motif 5)

C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
Reverse Opposite:
C G T A T A C G G A T C G T C A A C G T A C G T A C G T C G A T C G T A C G T A C G T A G A C T A C G T A G T C A G T C C G T A
p-value:1e-11
log p-value:-2.567e+01
Information Content per bp:1.722
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif5.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets49.0 +/- 23.7bp
Average Position of motif in Background54.6 +/- 11.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGGAAWTTAAAAKRCT
---NATTCAAAT----
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGAAWTTAAAAKRCT
--CGGTTTCAAA----
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T

Hoxd9/MA0913.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGGAAWTTAAAAKRCT
--GCAATAAAAA----
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T T C A G G A T C T G C A C T G A C G A T G C T A G C T A G C T A C G T A G C T A A C G T A C G T A C G T A C G T

Arid3a/MA0151.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:forward strand
Alignment:TGGAAWTTAAAAKRCT
-----ATTAAA-----
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T C G T A A C G T G A C T C G T A C G T A C G T A A C G T A C G T A C G T A C G T A C G T

Arid3b/MA0601.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGGAAWTTAAAAKRCT
--NTAATTAATAT---
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T A C G T A C G T C G T A C G T A C G A T A C G T C G T A C G T A C G A T C G T A A C G T A C G T A C G T A C G T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TGGAAWTTAAAAKRCT
-NGCAATTAAA-----
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T A C G T A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:TGGAAWTTAAAAKRCT
--GNCTATAAAAGG--
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T

PB0116.1_Elf3_2/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--TGGAAWTTAAAAKRCT
GTTCAAAAAAAAAATTC-
 A C G T A C G T C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:TGGAAWTTAAAAKRCT
TAGGTAATAAAATTCA
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
C A G T G T C A A C T G T C A G G A C T G T C A C T G A G C A T C G T A C G T A G C T A G C T A G C A T C A G T G T A C C G T A

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:TGGAAWTTAAAAKRCT
---AAACAAACATTC-
 C G A T T C A G T C A G G T C A C G T A C G A T C G A T G A C T C G T A C G T A G T C A C G T A C A G T C T A G A G T C A C G T
A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C A C G T