Information for 7-CMCAGSAGCAKAW (Motif 15)

A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
Reverse Opposite:
C G T A A C G T G T C A A C G T A C T G A G T C A C G T A T G C A G T C A C G T A C T G A C T G A C T G
p-value:1e-7
log p-value:-1.813e+01
Information Content per bp:1.871
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets52.1 +/- 17.2bp
Average Position of motif in Background47.0 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0050.1_Osr1_1/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW
ATTTACAGTAGCAAAA
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
G C A T G C A T C G A T G C A T G T C A G A T C C T G A A C T G C G A T C T G A C T A G A G T C G C T A T G C A G C T A C T G A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW
CCACACAGCAGGAGA-
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW
GAGCACAGCAGGACA-
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CMCAGSAGCAKAW
CACAGCAGGGGG-
 A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

PB0051.1_Osr2_1/Jaspar

Match Rank:6
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW
ATGTACAGTAGCAAAG
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CMCAGSAGCAKAW-
ATCCACAGGTGCGAAAA
 A C G T A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T A C G T
T C G A A C G T G T A C G T A C T G C A G T A C G T C A A T C G T A C G A G C T A C T G A G T C C T A G T C G A C G T A G T C A C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CMCAGSAGCAKAW
CACAGN-------
 A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CMCAGSAGCAKAW-
DCHCAGCAGGRGGCC
 A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CMCAGSAGCAKAW
NNVVCAGCTGBN---
 A C G T A C G T A G T C G T A C T A G C C G T A A C T G A T C G C G T A A C T G A G T C C G T A C A G T C G T A C G A T
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T A C G T A C G T A C G T