Information for 2-GCATATTTGA (Motif 11)

A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A
Reverse Opposite:
C G A T T G A C G T C A C T G A C G T A A G C T G T C A G C A T T A C G A G T C
p-value:1e-9
log p-value:-2.171e+01
Information Content per bp:1.670
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif6.37%
Number of Background Sequences with motif1195.1
Percentage of Background Sequences with motif2.46%
Average Position of motif in Targets46.3 +/- 25.3bp
Average Position of motif in Background50.2 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)-0.9
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0146.1_Mafk_2/Jaspar

Match Rank:1
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----GCATATTTGA-
CCTTGCAATTTTTNN
 A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T
A G T C T A G C C A G T A C G T C T A G G T A C C T G A G T C A C G A T C G A T G A C T G A C T A G C T C A G T A G T C

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCATATTTGA
AAGGATATNTN-
 A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:3
Score:0.60
Offset:5
Orientation:reverse strand
Alignment:GCATATTTGA-----
-----TTTGAAACCG
 A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:4
Score:0.59
Offset:4
Orientation:forward strand
Alignment:GCATATTTGA---
----ATTTGAATT
 A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCATATTTGA---
---CCTTTGATGT
 A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T

POU4F2/MA0683.1/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCATATTTGA----
ATGCATAATTAATGAG
 A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

Arid3a/MA0151.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GCATATTTGA-
-----TTTAAT
 A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A C G T A C G T C T G A C G T A A C G T

Pou2f3/MA0627.1/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCATATTTGA
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

PH0145.1_Pou2f3/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------GCATATTTGA
TTGTATGCAAATTAGA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A
A C G T G C A T C A T G G A C T C G T A A G C T A C T G A G T C C G T A C G T A C G T A C A G T A C G T G T C A C T A G T G C A

POU3F3/MA0788.1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----GCATATTTGA
ATTATGCTAATTT--
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A C A G T T C G A A C G T A G C T A C G T A C T G C G T A
C G T A C G A T C G A T C G T A A C G T C A T G A G T C G C A T C G T A C T G A G C A T C G A T C G A T A C G T A C G T