Information for 5-CCSGTGMACTYYG (Motif 7)

A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
Reverse Opposite:
A T G C C T A G C T A G C T G A A C T G C G A T A C T G A G T C C G T A G T A C A T C G A C T G A C T G
p-value:1e-11
log p-value:-2.561e+01
Information Content per bp:1.860
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.19%
Number of Background Sequences with motif21.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets24.0 +/- 17.5bp
Average Position of motif in Background51.5 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCSGTGMACTYYG
---CTGACCTTTG
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CCSGTGMACTYYG-------
----TGGACTTTGNNCTNTG
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCSGTGMACTYYG
CNNTTGACCTTTG
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
G A T C A G T C A G T C C A G T A G C T A C T G C G T A A G T C A T G C A G C T G A C T C G A T C A T G

HNF4G/MA0484.1/Jaspar

Match Rank:4
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CCSGTGMACTYYG------
----TGGACTTTGNNCTCN
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCSGTGMACTYYG---
NNNGTGACCTTTGNNN
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G A C G T A C G T A C G T
G T A C C G T A A T C G C T A G A G C T T C A G G T C A G T A C G T A C A G C T A G C T C G A T C A T G T C G A C A T G G T C A

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CCSGTGMACTYYG
---GTGACCTT--
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
A C G T A C G T A C G T A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CCSGTGMACTYYG---
NNNNTGACCTTTNNNN
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G A C G T A C G T A C G T
A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCSGTGMACTYYG
TGACCTTGACCT---
 A C G T A C G T A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CCSGTGMACTYYG-----
--ATTGGACTTTGACCCC
 A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCSGTGMACTYYG
NCACGTGACN----
 A C G T A G T C A G T C A T G C A C T G A C G T A C T G G T A C G C T A A G T C A G C T A G T C A G T C A T C G
A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C A C G T A C G T A C G T A C G T