Information for 4-GGWCAMAAYAYTC (Motif 6)

A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
Reverse Opposite:
A T C G G T C A C T G A A C G T C T A G A C G T A C G T A C G T A C G T A T C G C G T A A G T C A G T C
p-value:1e-11
log p-value:-2.576e+01
Information Content per bp:1.863
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets67.1 +/- 26.8bp
Average Position of motif in Background56.6 +/- 12.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0121.1_Foxj3_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGWCAMAAYAYTC--
AACACCAAAACAAAGGA
 A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C A C G T A C G T
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GGWCAMAAYAYTC
AGGTCA--------
 A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GGWCAMAAYAYTC
ARGAGGMCAAAATGW--
 A C G T A C G T A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGWCAMAAYAYTC
TRAGGTCA--------
 A C G T A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0120.1_Foxj1_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGWCAMAAYAYTC-
ATGTCACAACAACAC
 A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

PH0013.1_Cdx2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGWCAMAAYAYTC
AAAGGTAATAAAATTT
 A C G T A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
C G T A T C G A T A C G C T A G T C A G A G C T G T C A C T G A C G A T C G T A C G T A G C T A G C T A G A C T C A G T G A C T

PH0012.1_Cdx1/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGWCAMAAYAYTC
TAAGGTAATAAAATTA
 A C G T A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
C G A T C T G A T G C A C T A G T C A G G A C T G T C A C T G A C G A T G C T A C G T A G C T A G C T A A G C T C A G T G C T A

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:8
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GGWCAMAAYAYTC
AGRGGTCA--------
 A C G T A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GGWCAMAAYAYTC
AAGGTCAC-------
 A C G T A C G T A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGWCAMAAYAYTC
-AAACAAACATTC
 A C T G A C T G C G A T A T G C C G T A G T C A C G T A C G T A A G T C C G T A A G C T A C G T A T G C
A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C