Information for 4-AGACATTCGG (Motif 13)

C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G
Reverse Opposite:
A G T C A G T C A T C G C G T A C T G A G A C T A T C G C G A T A G T C A C G T
p-value:1e-8
log p-value:-2.011e+01
Information Content per bp:1.854
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif27.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets50.9 +/- 32.9bp
Average Position of motif in Background57.2 +/- 25.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SPDEF/MA0686.1/Jaspar

Match Rank:1
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGACATTCGG--
-TACATCCGGGT
 C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T A C G T
A C G T G A C T C T G A A G T C C G T A G A C T G T A C A G T C A C T G A T C G A C T G G C A T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.58
Offset:-7
Orientation:forward strand
Alignment:-------AGACATTCGG
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACATTCGG
CCAGACRSVB--
 A C G T A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--AGACATTCGG
CCAGACAG----
 A C G T A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGACATTCGG
BCAGACWA----
 A C G T A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGACATTCGG---
NTGCCCTTGGGCGN
 A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T A C G T A C G T
G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

ETV3/MA0763.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:AGACATTCGG-
-CACTTCCGGT
 C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T
A C G T A G T C T C G A A G T C C G A T C A G T G T A C G T A C C T A G C T A G A G C T

ELK1/MA0028.2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:AGACATTCGG-
-NACTTCCGGT
 C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T
A C G T G A T C T C G A A G T C C G A T A C G T T G A C T G A C A C T G A T C G G A C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---AGACATTCGG----
NNTNNACAATGGGANNN
 A C G T A C G T A C G T C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

PB0077.1_Spdef_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGACATTCGG------
GTACATCCGGATTTTT
 C G T A A C T G C G T A A T G C C G T A A G C T A C G T T A G C A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T
T C A G G A C T C T G A A G T C C G T A C G A T T A G C G T A C A C T G A T C G C T G A G C A T G C A T G A C T A G C T A G C T