Information for 3-CTCAGCGGGC (Motif 12)

A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C
Reverse Opposite:
C T A G T G A C G T A C T G A C A T C G T G A C A G C T C T A G G T C A A C T G
p-value:1e-9
log p-value:-2.091e+01
Information Content per bp:1.650
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.46%
Number of Background Sequences with motif422.4
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets57.8 +/- 28.8bp
Average Position of motif in Background49.7 +/- 27.9bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGGC
DCTCAGCAGG-
 A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CTCAGCGGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTCAGCGGGC--
GAGCACAGCAGGACA
 A C G T A C G T A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTCAGCGGGC--
CCACACAGCAGGAGA
 A C G T A C G T A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGGC----
DCHCAGCAGGRGGCC
 A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCAGCGGGC--
CACAGCAGGGGG
 A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTCAGCGGGC
CCTCACCTG--
 A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGGC
NNGCAGCTGTC
 A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C
A T G C G A C T A T C G A G T C C G T A A T C G A G T C A C G T A C T G A G C T A G T C

ZIC3/MA0697.1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTCAGCGGGC----
NCGCAGCGGGGGGTC
 A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C A C G T A C G T A C G T A C G T
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CTCAGCGGGC
NNVVCAGCTGBN
 A C G T A C G T A G T C C A G T A G T C T C G A A C T G T A G C A C T G A C T G A C T G A G T C
C T A G A G T C T A C G T A C G T G A C C G T A A C T G T A G C G C A T C A T G A T G C A G C T