Information for 21-CTGCGGGCCTCCG (Motif 38)

A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
Reverse Opposite:
A G T C A C T G A C T G C G T A C T A G A C T G A G T C A G T C G T A C A C T G A G T C C G T A A C T G
p-value:1e-6
log p-value:-1.454e+01
Information Content per bp:1.947
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets35.0 +/- 14.2bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

GCM2/MA0767.1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CTGCGGGCCTCCG
TATGCGGGTA----
 A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:2
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CTGCGGGCCTCCG
NNNNATGCGGGTNNNN-
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A A C G T

ETV5/MA0765.1/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CTGCGGGCCTCCG--
-----NACTTCCGGT
 A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A T C T C G A A G T C C G A T C G A T G T A C G T A C A C T G A T C G G A C T

PB0201.1_Zfp281_2/Jaspar

Match Rank:4
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----CTGCGGGCCTCCG
NNNATTGGGGGTNTCCT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
A G T C G C T A G C T A G C T A C G A T C G A T A C T G A C T G A C T G C A T G A C T G A G C T G T A C G C A T G T A C G T A C G C A T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---CTGCGGGCCTCCG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTGCGGGCCTCCG
--CNAGGCCT---
 A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
A C G T A C G T A T G C G A T C C T G A A C T G A C T G A G T C A G T C A G C T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTGCGGGCCTCCG
TTGCGTGCVA---
 A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CTGCGGGCCTCCG
-TNNGGGCAG---
 A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTGCGGGCCTCCG
DCTCAGCAGG------
 A C G T A C G T A C G T A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.51
Offset:6
Orientation:reverse strand
Alignment:CTGCGGGCCTCCG---
------ACTTCCGGNT
 A G T C A C G T A C T G A G T C A C T G A C T G A C T G G T A C A G T C A C G T A G T C A G T C A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G T C C G A T G A C T A G T C A T G C A C T G A T C G A C G T G A C T