Information for 7-GTTGAGTGAC (Motif 41)

A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C C G T A A G T C A C G T A G T C C G T A C G T A A G T C
p-value:1e-6
log p-value:-1.437e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets72.0 +/- 29.0bp
Average Position of motif in Background25.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTGAC---
-BTGABTGACAGS
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTGAC---
-NTGATTGACAGN
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTGAC-
CTTGAGTGGCT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T
A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:4
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GTTGAGTGAC----
--TGAGTGACAGSC
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTGAC--
GTGGCGTGACNG
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T A C G T
T C A G A C G T C A T G A C T G A T G C A T C G A C G T A T C G C T G A A G T C G A T C C A T G

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GTTGAGTGAC-
-TTGAGTGSTT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T
A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTTGAGTGAC
BTBRAGTGSN
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:8
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTGAC
CTYRAGTGSY
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:9
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GTTGAGTGAC-
-TTRAGTGSYK
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C A C G T
A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GTTGAGTGAC
ATGGGGTGAT
 A C T G A C G T A C G T A C T G C G T A A C T G A C G T A C T G C G T A A G T C
T C G A A G C T C A T G A C T G A T C G T A C G G A C T A T C G C G T A A G C T