Information for 2-CAGAKMACAGTGTGGA (Motif 3)

A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A
Reverse Opposite:
A C G T A G T C A G T C C G T A A G T C C T G A A G T C A C G T A T C G A C G T A C T G G T C A A C G T A G T C A C G T A C T G
p-value:1e-13
log p-value:-3.174e+01
Information Content per bp:1.806
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.79%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.8 +/- 22.0bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CAGAKMACAGTGTGGA
----DCTCAGCAGG--
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A
A C G T A C G T A C G T A C G T C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA-
--GAGCACAGCAGGACA
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:CAGAKMACAGTGTGGA
-----CACAGN-----
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:4
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA
-AGGVNCCTTTGT---
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A
A C G T C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.51
Offset:2
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA-
--CCACACAGCAGGAGA
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T
A C G T A C G T G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0132.1_Hbp1_2/Jaspar

Match Rank:6
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA--
-TGTTCCCATTGTGTACT
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T A C G T
A C G T C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.50
Offset:0
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA
CCAGGAACAG------
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:8
Score:0.49
Offset:11
Orientation:reverse strand
Alignment:CAGAKMACAGTGTGGA-
-----------GTGGAT
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:forward strand
Alignment:CAGAKMACAGTGTGGA-
--CCACACAGCAGGAGA
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

GLI2/MA0734.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CAGAKMACAGTGTGGA---
-------CAGTGTGGTCGC
 A G T C C G T A A C T G T G C A C A G T G T A C G T C A A T G C C G T A A C T G A G C T C T A G A C G T C T A G C T A G G T C A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C