Information for 1-RGGATACAGA (Motif 22)

C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A
Reverse Opposite:
C G A T G A T C A C G T A T C G A C G T T C G A C G A T A G T C A G T C A G C T
p-value:1e-9
log p-value:-2.287e+01
Information Content per bp:1.762
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.17%
Number of Background Sequences with motif302.4
Percentage of Background Sequences with motif0.61%
Average Position of motif in Targets43.6 +/- 27.7bp
Average Position of motif in Background49.2 +/- 29.1bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT3/MA0610.1/Jaspar

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-RGGATACAGA
NTTGATACATT
 A C G T C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A
C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:RGGATACAGA--
AGGAAACAGCTG
 C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T A C G T
T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:RGGATACAGA
-GTAAACAG-
 C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A
A C G T C T A G C A G T G T C A C G T A C T G A A G T C C G T A T A C G A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:RGGATACAGA
GGAACAAAGR
 C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A
T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G

FOXP1/MA0481.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----RGGATACAGA-
CAAAAGTAAACAAAG
 A C G T A C G T A C G T A C G T C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T
G T A C G C T A C G T A T C G A C T G A T C A G G C A T C G T A C G T A C G T A T G A C C G T A T G C A C G T A T C A G

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-RGGATACAGA
AAGTAAACAAA
 A C G T C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A
C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RGGATACAGA---
-GGTTAGAGACCT
 C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T A C G T A C G T
A C G T C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-RGGATACAGA-
NDGTAAACARRN
 A C G T C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T
G C A T C T A G T C A G A C G T C G T A C G T A C G T A A G T C C G T A T C A G T C A G C T G A

Foxo1/MA0480.1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RGGATACAGA-
TGTAAACAGGA
 C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T
C G A T C T A G C G A T G T C A C G T A C G T A A G T C C G T A T C A G T A C G G T C A

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RGGATACAGA--
ATTTGCATACAATGG
 A C G T A C G T A C G T C T A G A C T G C T A G G C T A A G C T C G T A T A G C C G T A C T A G C G T A A C G T A C G T
G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G