Information for 5-CACACAARTTCAAGCA (Motif 12)

A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
Reverse Opposite:
A C G T T A C G A G T C G C A T A C G T C A T G G C T A G T C A A G C T A C G T A C G T A C T G A C G T A C T G C G A T T A C G
p-value:1e-11
log p-value:-2.575e+01
Information Content per bp:1.727
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.4 +/- 23.2bp
Average Position of motif in Background47.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CACACAARTTCAAGCA
CGAAGCACACAAAATA-----
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A A C G T A C G T A C G T A C G T A C G T

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CACACAARTTCAAGCA
----CGGTTTCAAA--
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
A C G T A C G T A C G T A C G T T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CACACAARTTCAAGCA
AGCGGCACACACGCAA-----
 A C G T A C G T A C G T A C G T A C G T A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T A C G T A C G T A C G T

PB0170.1_Sox17_2/Jaspar

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CACACAARTTCAAGCA--
-GACCACATTCATACAAT
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A A C G T A C G T
A C G T T A C G G C T A A G T C G T A C G T C A A G T C G C T A A G C T C G A T T G A C C T G A A G C T T C G A G A T C T C G A C G T A C G A T

Rarg/MA0859.1/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---CACACAARTTCAAGCA
AAGGTCAAAAGGTCAA---
 A C G T A C G T A C G T A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
T C G A T C G A C T A G A C T G A C G T A G T C T C G A C G T A C T G A T C G A A C T G A C T G A C G T A G T C T C G A G C T A A C G T A C G T A C G T

RARA/MA0729.1/Jaspar

Match Rank:6
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CACACAARTTCAAGCA
GAGGTCAAAAGGTCAATG-
 A C G T A C G T A C G T A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
C T A G T C G A A C T G C A T G A G C T T A G C C T G A C G T A C G T A T G C A A C T G A C T G C G A T A G T C C T G A G C T A C A G T A C T G A C G T

TBX1/MA0805.1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:CACACAARTTCAAGCA
-TCACACCT-------
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
A C G T A C G T T G A C C T G A A T G C T C G A A G T C A G T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:8
Score:0.49
Offset:6
Orientation:reverse strand
Alignment:CACACAARTTCAAGCA
------NATTCAAAT-
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:9
Score:0.49
Offset:5
Orientation:forward strand
Alignment:CACACAARTTCAAGCA-----
-----ATATCAAAACAAAACA
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A

TBX15/MA0803.1/Jaspar

Match Rank:10
Score:0.48
Offset:1
Orientation:reverse strand
Alignment:CACACAARTTCAAGCA
-TCACACCT-------
 A T G C C G T A A G T C C G T A G T A C C G T A G T C A C T G A A C G T C G A T G A T C C G T A C G T A C T A G A G T C C G T A
A C G T G A C T T G A C T C G A A T G C T G C A A G T C G A T C G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T