Information for 2-GCTCTTTTAAAAT (Motif 6)

A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T
Reverse Opposite:
C G T A C G A T A C G T A C G T A C G T C G T A C G T A C G T A C T G A C T A G C T G A C T A G T G A C
p-value:1e-11
log p-value:-2.693e+01
Information Content per bp:1.779
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.21%
Number of Background Sequences with motif19.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets52.6 +/- 23.4bp
Average Position of motif in Background59.3 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:GCTCTTTTAAAAT-
----TTTGAAACCG
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G C G T A C T G A C G T A G T A C A G T C A T C G

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCTCTTTTAAAAT
----ATTTGAATT
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T
A C G T A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T

PB0129.1_Glis2_2/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GCTCTTTTAAAAT---
--TCTTTANTAATANN
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T A C G T A C G T
A C G T A C G T A G C T A G T C C A G T G C A T C G A T C G T A C G A T G A C T G T C A C G T A G A C T T G C A G C A T C G A T

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTCTTTTAAAAT
-NGCAATTAAA--
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T
A C G T T A C G A T C G G A T C G T C A C T G A G C A T C G A T G C T A T C G A G C T A A C G T A C G T

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCTCTTTTAAAAT-
--CCTTTTATAGNC
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

HOXC13/MA0907.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCTCTTTTAAAAT
--GCTCGTAAAAA
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

PB0187.1_Tcf7_2/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCTCTTTTAAAAT---
-CCGTATTATAAACAA
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T A C G T A C G T
A C G T G T A C A G T C C A T G C G A T G C T A G C A T C A G T C T G A A C G T G C T A G T C A G T C A G A T C G T C A G C T A

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCTCTTTTAAAAT
--NCYAATAAAA-
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T
A C G T A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCTCTTTTAAAAT-
TTCTATTTTTAGNNN
 A C G T A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T
C G A T C A G T A G T C A G C T C T G A G C A T G C A T G A C T G A C T C G A T C T G A C A T G G T A C G C T A G A C T

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GCTCTTTTAAAAT-
NNTTTTTCTTATNT
 A C T G A G T C A G C T A G T C A G C T C G A T A C G T A C G T G T C A G T C A C G T A C G T A G A C T A C G T
A C T G G C A T A C G T C G A T C G A T C G A T C A G T G T A C C G A T C G A T G T C A C G A T G C A T C A G T