p-value: | 1e-13 |
log p-value: | -3.023e+01 |
Information Content per bp: | 1.826 |
Number of Target Sequences with motif | 6.0 |
Percentage of Target Sequences with motif | 0.66% |
Number of Background Sequences with motif | 0.5 |
Percentage of Background Sequences with motif | 0.00% |
Average Position of motif in Targets | 40.0 +/- 17.8bp |
Average Position of motif in Background | 64.0 +/- 0.0bp |
Strand Bias (log2 ratio + to - strand density) | -2.3 |
Multiplicity (# of sites on avg that occur together) | 1.00 |
Motif File: | file (matrix) reverse opposite |
SVG Files for Logos: | forward logo reverse opposite |
PB0060.1_Smad3_1/Jaspar
Match Rank: | 1 |
Score: | 0.59 |
Offset: | -5 |
Orientation: | forward strand |
Alignment: | -----CCAGCCACGAGTCTCA CAAATCCAGACATCACA---- |
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Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer
Match Rank: | 2 |
Score: | 0.59 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCAGCCACGAGTCTCA SCAGYCADGCATGAC- |
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Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer
Match Rank: | 3 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCAGCCACGAGTCTCA CCAGACAG-------- |
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Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer
Match Rank: | 4 |
Score: | 0.58 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCAGCCACGAGTCTCA BCAGACWA-------- |
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NFYA/MA0060.2/Jaspar
Match Rank: | 5 |
Score: | 0.57 |
Offset: | -4 |
Orientation: | reverse strand |
Alignment: | ----CCAGCCACGAGTCTCA TGGACCAATCAGCACTCT-- |
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Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer
Match Rank: | 6 |
Score: | 0.55 |
Offset: | 0 |
Orientation: | reverse strand |
Alignment: | CCAGCCACGAGTCTCA CCAGACRSVB------ |
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GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer
Match Rank: | 7 |
Score: | 0.55 |
Offset: | -3 |
Orientation: | reverse strand |
Alignment: | ---CCAGCCACGAGTCTCA GGACCACCCACG------- |
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PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer
Match Rank: | 8 |
Score: | 0.54 |
Offset: | 0 |
Orientation: | forward strand |
Alignment: | CCAGCCACGAGTCTCA GCAGCCAAGCGTGACN |
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PB0147.1_Max_2/Jaspar
Match Rank: | 9 |
Score: | 0.54 |
Offset: | 1 |
Orientation: | forward strand |
Alignment: | CCAGCCACGAGTCTCA -GTGCCACGCGACTG- |
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Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer
Match Rank: | 10 |
Score: | 0.53 |
Offset: | -2 |
Orientation: | reverse strand |
Alignment: | --CCAGCCACGAGTCTCA TCCCAGMCRAGCCCC--- |
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