Information for 6-TATAAATTTTTAT (Motif 16)

C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T
Reverse Opposite:
C G T A A C G T C G T A C G T A C G T A G C T A C G T A A C G T A C G T A C G T C G T A A C G T C G T A
p-value:1e-5
log p-value:-1.204e+01
Information Content per bp:1.938
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.38%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets58.8 +/- 8.7bp
Average Position of motif in Background68.6 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TATAAATTTTTAT-
AYATGYATATGCATR
 A C G T C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T
C T G A G A C T C T G A G A C T C T A G G A T C C T G A G A C T C T G A G A C T C T A G G A T C C T G A G C A T C T A G

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TATAAATTTTTAT---
-ATGAATATTCATGAG
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T G C T A A C G T C T A G G T C A C G T A A C G T C G T A C G A T C A G T A G T C C G T A A C G T C T A G C T G A A T C G

PH0078.1_Hoxd13/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TATAAATTTTTAT------
---NNANTTTTATTGGNNN
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C T G A C T G A C A G T C G A T C G A T G C A T C T G A G A C T C G A T C T A G T C A G C G A T G C T A C A T G

HOXD13/MA0909.1/Jaspar

Match Rank:4
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TATAAATTTTTAT---
------NTTTTATTGG
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T A C G T C G A T C G A T C T G A G C A T C A G T C T A G T A C G

PH0075.1_Hoxd10/Jaspar

Match Rank:5
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TATAAATTTTTAT------
--NTNAATTTTATTGNATT
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:6
Score:0.63
Offset:6
Orientation:reverse strand
Alignment:TATAAATTTTTAT---
------TTTTTATTGG
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C G T A C G T C G A T C G A T C G T A C G A T C A G T T C A G A T C G

ONECUT3/MA0757.1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TATAAATTTTTAT
NTTATTGATTTTTT-
 A C G T A C G T C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T
C G T A C G A T G C A T G C T A G C A T A G C T C A T G C T G A G A C T G A C T C G A T G C A T G A C T A G C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:TATAAATTTTTAT----
-------TTTTATTRGN
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T A C G T A C G T C G A T C G T A G C A T C A G T C T G A A T C G G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:TATAAATTTTTAT----
------NTTTTATTACN
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TATAAATTTTTAT------
--ANTAATTTTATGGCCGN
 C G A T C G T A A C G T C G T A C G T A C G T A G A C T C G A T A C G T A C G T A C G T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T