Information for 1-GAGGCAGAAATAG (Motif 4)

A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
Reverse Opposite:
A G T C A G C T C G T A A C G T A C G T A G C T A G T C A C G T A C T G A G T C A G T C A C G T A G T C
p-value:1e-8
log p-value:-1.888e+01
Information Content per bp:1.940
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.90%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.0 +/- 24.3bp
Average Position of motif in Background92.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:1
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GAGGCAGAAATAG-
--KCCAAAAATAGC
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G A C G T
A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GAGGCAGAAATAG--
ATGCTAAAAATAGAA
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G A C G T A C G T
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAGGCAGAAATAG-
--DCYAAAAATAGM
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G A C G T
A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GAGGCAGAAATAG-
--GCTAAAAATAGC
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G A C G T
A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGGCAGAAATAG
ARGAGGMCAAAATGW
 A C G T A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
T G C A C T A G C T A G C T G A C A T G A C T G T G C A G A T C G T C A T G C A G T C A G T C A A G C T C T A G G C A T

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGGCAGAAATAG
CWGGCGGGAA---
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
T A G C C G A T T A C G A C T G A G T C A C T G A T C G A T C G C G T A C T G A A C G T A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGGCAGAAATAG
---CCAAAAATAG
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
A C G T A C G T A C G T G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGGCAGAAATAG----
AADGAGVCANYASTACAGNC
 A C G T A C G T A C G T A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G A C G T A C G T A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

HOXA5/MA0158.1/Jaspar

Match Rank:9
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGGCAGAAATAG
----CACTAATT-
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
A C G T A C G T A C G T A C G T G T A C C T G A A T G C C G A T C G T A C T G A A C G T A C G T A C G T

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGGCAGAAATAG
---CCWGGAATGY
 A C T G C G T A A C T G A C T G A G T C C G T A A C T G C T G A C G T A C G T A A C G T C T G A A C T G
A C G T A C G T A C G T A T G C G A T C C G A T C T A G A C T G G C T A C G T A A G C T A C T G A G C T