Information for 1-TGRTGARTAAAAACRA (Motif 1)

C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
Reverse Opposite:
A C G T A G C T T A C G A C G T A G C T A C G T C G A T G A C T C G T A A G T C C A G T A G T C C T G A G A T C A G T C C G T A
p-value:1e-14
log p-value:-3.249e+01
Information Content per bp:1.697
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif9.09%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets47.3 +/- 25.7bp
Average Position of motif in Background64.6 +/- 32.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGRTGARTAAAAACRA
---AAAGTAAACA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGRTGARTAAAAACRA
---AAAGTAAACA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA
---TATGTAAACANG-
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T G C A T T C G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C T G A T A C G A C G T

MF0005.1_Forkhead_class/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA
----AAATAAACA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA
-NCWRWGTAAACANSV
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G

FOXP2/MA0593.1/Jaspar

Match Rank:6
Score:0.57
Offset:4
Orientation:forward strand
Alignment:TGRTGARTAAAAACRA
----AAGTAAACAAA-
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA
---WAAGTAAAYA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA
-NCTAAGTAAACA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T

FOXL1/MA0033.2/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:forward strand
Alignment:TGRTGARTAAAAACRA
------GTAAACA---
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C T A G G A C T T G C A G T C A T G C A A G T C G T C A A C G T A C G T A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TGRTGARTAAAAACRA-
--CAAAGTAAACANNNN
 C G A T C T A G C T A G A G C T C T A G G C T A C T A G A C G T C T G A C G T A G T C A T C G A C G T A A T G C C T G A C G T A A C G T
A C G T A C G T G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A