Information for 8-TTGTSTTWAWAWACMR (Motif 9)

A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
Reverse Opposite:
A G T C A C T G A C T G A C G T C G T A A C G T C G A T A C G T C G A T C G T A G T C A A T C G C G T A A G T C C G T A T C G A
p-value:1e-8
log p-value:-2.030e+01
Information Content per bp:1.843
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets50.4 +/- 26.7bp
Average Position of motif in Background83.9 +/- 8.3bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---TTGTSTTWAWAWACMR
CCATTGTATGCAAAT----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T A C G T A C G T A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:2
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TTGTSTTWAWAWACMR
NNTTTTGTTTTGATNT----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T A C G T A C G T A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TTGTSTTWAWAWACMR
--GTCGTAAAAT----
 A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T A C G T A C G T A C G T

FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:TTGTSTTWAWAWACMR
-CBTGTTTAYAWW---
 A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A C G T A T G C A C G T A C G T C T A G A C G T A C G T A C G T C G T A A G T C G C T A C G A T G C A T A C G T A C G T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:TTGTSTTWAWAWACMR
--GTCGTAAAAA----
 A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T A C G T A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:TTGTSTTWAWAWACMR
--NTGTTTAYATWW--
 A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A C G T A C G T C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:TTGTSTTWAWAWACMR
-AATATTAATAAAGA-
 A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A C G T G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A A C G T

PB0032.1_IRC900814_1/Jaspar

Match Rank:8
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTSTTWAWAWACMR
GNNATTTGTCGTAANN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
T C A G G A T C G C A T C G T A C G A T C G A T G A C T A C T G G A C T A G T C A C T G C A G T T C G A C T G A G C T A G C A T A C G T A C G T A C G T A C G T A C G T

PB0168.1_Sox14_2/Jaspar

Match Rank:9
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------TTGTSTTWAWAWACMR
NNNCCATTGTGTNAN-------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
A T C G T G A C A C T G A G T C G A T C C G T A A C G T A C G T T A C G G C A T A T C G A G C T T C A G T G C A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0062.1_Sox12_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TTGTSTTWAWAWACMR
TAATTGTTCTAAAC-----
 A C G T A C G T A C G T A C G T A C G T A C T G A C G T A T G C A C G T A C G T C G T A C G T A C G T A C G T A C G A T C G T A A G T C G T A C C T A G
G A C T G C T A C G T A A C G T C G A T C T A G C G A T G A C T T G A C G C A T G T C A C G T A G C T A G T A C A C G T A C G T A C G T A C G T A C G T