Information for 16-GWMCTKAMKAGTT (Motif 23)

A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T
Reverse Opposite:
C G T A C G T A A G T C A C G T G T C A A C T G A C G T G T C A C G T A A C T G A C T G C G A T A G T C
p-value:1e-5
log p-value:-1.164e+01
Information Content per bp:1.857
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.0 +/- 24.4bp
Average Position of motif in Background59.3 +/- 18.4bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0028.1_En1/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GWMCTKAMKAGTT---
GNATTAATTAGTTNNC
 A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C T G G A T C T G C A G A C T G A C T C G T A C G T A A G C T A G C T C T G A C T A G A C G T A C G T A G T C A T C G A G T C

HMBOX1/MA0895.1/Jaspar

Match Rank:2
Score:0.57
Offset:6
Orientation:forward strand
Alignment:GWMCTKAMKAGTT---
------ACTAGTTAAC
 A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G T C C G A T C T G A A T C G C G A T G C A T C G T A G T C A T A G C

PH0058.1_Hoxb3/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GWMCTKAMKAGTT---
TGAGCTAATTAGTTGGA
 A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PB0135.1_Hoxa3_2/Jaspar

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:GWMCTKAMKAGTT---
--CCTTAATNGNTTTT
 A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C A T G C G A C T C G A T C G T A C G T A A C G T T C A G A C T G G C A T C G A T G A C T C A G T A G C T

PH0092.1_Lhx2/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GWMCTKAMKAGTT--
NNNNNCTAATTAGTTTA
 A C G T A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GWMCTKAMKAGTT-----
--TTTTACGACTTTCCAT
 A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G A T A G C T G C A T A G C T T C G A G A T C C T A G C T G A G T A C C A G T A G C T G A C T G A T C T G A C T C G A G A C T

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GWMCTKAMKAGTT---
GANGTTAACTAGTTTNN
 A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GWMCTKAMKAGTT
TGACCTYA------
 A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T
A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T

PH0031.1_Evx1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GWMCTKAMKAGTT---
AGAACTAATTAGTGGAC
 A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G C T A T C A G G C T A T C G A A T G C G A C T G T C A G T C A A C G T A C G T C T G A T A C G A G C T A T C G T A C G C G T A T A G C

PH0147.1_Pou3f2/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GWMCTKAMKAGTT---
NNNACTAATTAATTANC
 A C G T A C T G C G T A G T A C A G T C A C G T A C G T C G T A G T A C A C G T C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G A T C C T G A G T C A T G C A G A T C C A G T G T C A C G T A C G A T C A G T C T G A C T G A C A G T G C A T G C T A G C A T A T G C