Information for 12-GAATATTGTACCG (Motif 19)

A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G
Reverse Opposite:
A G T C C T A G A C T G A G C T C G T A A G T C C G T A G T C A A C G T C G T A A C G T A C G T A G T C
p-value:1e-5
log p-value:-1.302e+01
Information Content per bp:1.931
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif2.02%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 15.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arid5a/MA0602.1/Jaspar

Match Rank:1
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAATATTGTACCG
NNTNNCAATATTAG----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:2
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----GAATATTGTACCG
NNTNNCAATATTAG----
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-GAATATTGTACCG---
CNNNTATTGTTCNNNNN
 A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-GAATATTGTACCG--
AANTTATTGTTCTNNA
 A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T
C G T A C G T A G C A T G C A T G C A T C G T A A G C T C G A T C T A G C G A T G A C T G T A C A G C T G C A T C T G A G C T A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAATATTGTACCG
ATGAATATTC-----
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GAATATTGTACCG---
AATCAATTGTTCCGCTA
 A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

PB0072.1_Sox5_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GAATATTGTACCG--
NNTTTATTGTTCTNNN
 A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T
G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

Sox17/MA0078.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAATATTGTACCG
-CTCATTGTC---
 A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G
A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T A C G T A C G T

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAATATTGTACCG--
-AAAATTGTTATGAA
 A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T
A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAATATTGTACCG--
GGAAAAATTGTTAGGAA
 A C G T A C G T A C T G C G T A C G T A A C G T C G T A A C G T A C G T A C T G A C G T C T G A G T A C A G T C A C T G A C G T A C G T
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A