Information for 10-RAGTRMAAAKWAC (Motif 18)

C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
Reverse Opposite:
A C T G A C G T C G A T T G A C A C G T A C G T A C G T A C G T A G C T C G T A A G T C A C G T A G T C
p-value:1e-5
log p-value:-1.341e+01
Information Content per bp:1.849
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif3.03%
Number of Background Sequences with motif10.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets46.8 +/- 24.2bp
Average Position of motif in Background49.1 +/- 19.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.67
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RAGTRMAAAKWAC-
AGAGTCCAAAGTCCA
 A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--RAGTRMAAAKWAC-
CANAGNNCAAAGTCCA
 A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-RAGTRMAAAKWAC
AAAGTAAACA----
 A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-RAGTRMAAAKWAC
AAAGTAAACA----
 A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

PRDM1/MA0508.1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RAGTRMAAAKWAC
AGAAAGTGAAAGTGA-
 A C G T A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
C G T A C T A G C T G A T C G A C T G A C T A G C A G T C T A G C G T A C T G A C G T A T C A G A C G T C T A G C T G A A C G T

Foxa2/MA0047.2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---RAGTRMAAAKWAC
NCTAAGTAAACA----
 A C G T A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
T A G C G T A C G C A T T C G A C G T A C T A G A G C T G T C A T G C A C G T A A G T C C G T A A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RAGTRMAAAKWAC
GAAAGTGAAAGT---
 A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-RAGTRMAAAKWAC
WAAGTAAAYA----
 A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RAGTRMAAAKWAC
NCWRWGTAAACANSV-
 A C G T A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G A C G T

FOXA1/MA0148.3/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RAGTRMAAAKWAC
CAAAGTAAACANNNN
 A C G T A C G T C T A G C G T A A C T G A C G T C T G A G T C A C G T A C G T A C G T A A C G T C G T A C G T A A G T C
G T A C G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C G C T A C G A T T A C G T C A G C T G A