Information for 2-GGDABAGTGTGVCGGG (Motif 2)

A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
Reverse Opposite:
A G T C A G T C A G T C C T A G A C T G A G T C C G T A A T G C G T C A G T A C A C G T T C G A C G A T G A C T A G T C A G T C
p-value:1e-9
log p-value:-2.177e+01
Information Content per bp:1.711
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.30%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.3 +/- 18.5bp
Average Position of motif in Background39.5 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer

Match Rank:1
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGDABAGTGTGVCGGG
YDGHTACAWTGTADC---
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
G A C T C G A T C A T G G C T A G C A T C G T A A G T C G C T A G C A T C G A T T A C G G C A T C G T A C A G T G A T C A C G T A C G T A C G T

DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer

Match Rank:2
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GGDABAGTGTGVCGGG
TWGHWACAWTGTWDC---
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
G C A T C G A T C T A G G C T A G C A T C G T A G A T C G C T A C G A T C G A T C T A G C G A T C G T A C G A T G A T C A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.52
Offset:-3
Orientation:forward strand
Alignment:---GGDABAGTGTGVCGGG
CCAGGAACAG---------
 A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGDABAGTGTGVCGGG-----
----NAGANTGGCGGGGNGNA
 A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C C T G A T C A G C T G A C A T G A C G T C A T G T C A G A T G C T A C G A T C G T C A G C T A G T A G C C A T G C A G T G T C A

Dmbx1/MA0883.1/Jaspar

Match Rank:5
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GGDABAGTGTGVCGGG
TGAACCGGATTAATGAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T A C G T A C G T A C G T A C G T

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.50
Offset:-6
Orientation:forward strand
Alignment:------GGDABAGTGTGVCGGG
TGAACCGGATTAATGAA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
G C A T C T A G C T G A C G T A G T A C T G A C T C A G A T C G G T C A A C G T G A C T C G T A C T G A A C G T A T C G G C A T C G T A A C G T A C G T A C G T A C G T A C G T

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GGDABAGTGTGVCGGG--
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--GGDABAGTGTGVCGGG
GTAGGTCACTGGGTCA--
 A C G T A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A A C G T A C G T

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:forward strand
Alignment:-GGDABAGTGTGVCGGG
TGGAACAGMA-------
 A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
C A G T A C T G T C A G T G C A G C T A A T G C T C G A A T C G G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GGDABAGTGTGVCGGG
NAGGTCACNNTGACC--
 A C G T A C T G A C T G C G T A C G T A A C G T C G T A A C T G A C G T A T C G C G A T C T A G T G A C A G T C C T A G C T A G C T A G
T G C A C T G A C A T G C T A G C A G T A G T C C G T A A T G C A T G C T A C G G C A T T C A G G T C A G A T C G T A C A C G T A C G T