Information for 10-THTVAAAGTACAT (Motif 19)

C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T
Reverse Opposite:
C G T A A C G T C T A G C G A T C G T A G T A C A C G T A G C T A C G T A G T C C G T A C A G T C G T A
p-value:1e-4
log p-value:-9.565e+00
Information Content per bp:1.783
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.30%
Number of Background Sequences with motif110.7
Percentage of Background Sequences with motif0.23%
Average Position of motif in Targets46.0 +/- 20.0bp
Average Position of motif in Background49.3 +/- 26.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:forward strand
Alignment:THTVAAAGTACAT---
GGCAAAAGTCCAATAA
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----THTVAAAGTACAT
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:THTVAAAGTACAT---
TCTCAAAGGTCACCTG
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0152.1_Nkx3-1_2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:THTVAAAGTACAT-----
-TTCNAAGTACTTNNNNN
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C A G T A C G T A G T C T G A C C T G A C T G A C A T G A G C T T C G A G T A C G A C T G A C T A T C G T A C G G C T A C A T G A G C T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--THTVAAAGTACAT-
GGGGTCAAAGTCCAAT
 A C G T A C G T C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T
T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---THTVAAAGTACAT
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:THTVAAAGTACAT---
TCTCAAAGGTCACGAG
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:THTVAAAGTACAT
ANGNAAAGGTCA-
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T

PB0082.1_Tcf3_1/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----THTVAAAGTACAT
TATAGATCAAAGGAAAA
 A C G T A C G T A C G T A C G T C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T
G A C T G C T A G C A T C G T A A T C G C G T A G C A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G C T A G C T A G C T A

PH0117.1_Nkx3-1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:THTVAAAGTACAT-----
-TACTAAGTACTTAAATG
 C G A T G C T A A C G T T A C G C G T A C T G A C G T A A C T G A C G T C G T A A G T C C G T A C G A T A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G A T G A T C C G A T C T G A C T G A A T C G A G C T T C G A A T G C G A C T G A C T G C T A C T G A C G T A C G A T A T C G