Information for 2-GCCMTTAACAAAGATG (Motif 3)

A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
Reverse Opposite:
A G T C G T C A A C G T T G A C C G A T A G C T G A C T T A C G C A G T C A G T T C G A T C G A A C G T A C T G A C T G A G T C
p-value:1e-32
log p-value:-7.489e+01
Information Content per bp:1.692
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.10%
Number of Background Sequences with motif9.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets51.6 +/- 22.3bp
Average Position of motif in Background41.2 +/- 14.8bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GCCMTTAACAAAGATG
GGCCATTAAC-------
 A C G T A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0063.1_Hoxb8/Jaspar

Match Rank:2
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----GCCMTTAACAAAGATG
ACCGGCAATTAATAAA----
 A C G T A C G T A C G T A C G T A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
G C T A T A G C A G T C C A T G C T A G G A T C G T C A C G T A C G A T G C A T C G T A G C T A G A C T G T C A C T G A C G T A A C G T A C G T A C G T A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:3
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GCCMTTAACAAAGATG-
--NNNTAACAATTATAN
 A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G A C G T
A C G T A C G T A T G C T C A G G T A C A C G T T G C A T G C A A T G C C T G A C T G A G A C T C G A T C T G A G A C T C T G A C A T G

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GCCMTTAACAAAGATG
CTGCCCGCA---------
 A C G T A C G T A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

YY1/MA0095.2/Jaspar

Match Rank:5
Score:0.50
Offset:9
Orientation:forward strand
Alignment:GCCMTTAACAAAGATG-----
---------CAAGATGGCGGC
 A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:GCCMTTAACAAAGATG
----GGAACAAAGR--
 A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
A C G T A C G T A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:7
Score:0.48
Offset:-4
Orientation:forward strand
Alignment:----GCCMTTAACAAAGATG
GTCCGCCATTA---------
 A C G T A C G T A C G T A C G T A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GCCMTTAACAAAGATG--
-AGAAGAACAAAGGACTA
 A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G A C G T A C G T
A C G T G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.47
Offset:0
Orientation:reverse strand
Alignment:GCCMTTAACAAAGATG
BCMATTAG--------
 A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Hmx3/MA0898.1/Jaspar

Match Rank:10
Score:0.47
Offset:-4
Orientation:forward strand
Alignment:----GCCMTTAACAAAGATG
ACAAGCAATTAAAGAAT---
 A C G T A C G T A C G T A C G T A C T G T A G C T A G C G T C A A G C T A G C T G C T A G C T A A T G C C T G A C T G A C G T A A C T G G T C A A C G T A C T G
T C G A A T G C T G C A T C G A C A T G G A T C C T G A G T C A C G A T G A C T C G T A C G T A G C T A C T A G T C G A C G T A C A G T A C G T A C G T A C G T