Information for 15-KGACGCACAGRAG (Motif 12)

A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G
Reverse Opposite:
A G T C A C G T A G C T A T G C A G C T A C T G A C G T C T A G A G T C A C T G A C G T A G T C G T C A
p-value:1e-10
log p-value:-2.527e+01
Information Content per bp:1.909
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets69.5 +/- 24.8bp
Average Position of motif in Background31.2 +/- 16.2bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:KGACGCACAGRAG---
CGAAGCACACAAAATA
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Atf1/MA0604.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-KGACGCACAGRAG
ATGACGTA------
 A C G T A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G
T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:KGACGCACAGRAG
-----CACAGN--
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

PB0108.1_Atf1_2/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---KGACGCACAGRAG
GAATGACGAATAAC--
 A C G T A C G T A C G T A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G
T A C G C T G A T C G A A C G T C T A G C G T A A G T C C T A G G T C A C T G A A G C T C G T A C G T A G T A C A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:KGACGCACAGRAG----
-----CACAGCAGGGGG
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:KGACGCACAGRAG----
--CCACACAGCAGGAGA
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:KGACGCACAGRAG-----
--ATGTACAGTAGCAAAG
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G C A T C G A T T C A G G C A T G T C A G A T C C T G A A C T G C G A T C T G A A C T G A G T C G C T A G T C A G C T A C T A G

PB0207.1_Zic3_2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:KGACGCACAGRAG----
--GAGCACAGCAGGACA
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0130.1_Gm397_2/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:KGACGCACAGRAG---
AGCGGCACACACGCAA
 A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Gmeb1/MA0615.1/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----KGACGCACAGRAG
NNNTNGTACGTAANNNN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G G T C A A G T C A C T G A G T C C G T A A G T C C T G A A T C G C T G A C G T A A C T G
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C A C G T