Information for 18-AACCTGGCAA (Motif 28)

C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C A G T C C G T A A C T G C T A G C G A T A C G T
p-value:1e-7
log p-value:-1.622e+01
Information Content per bp:1.925
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.74%
Number of Background Sequences with motif16.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets46.1 +/- 32.8bp
Average Position of motif in Background53.8 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:AACCTGGCAA
--CTTGGCAA
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A
A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PH0104.1_Meis2/Jaspar

Match Rank:2
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---AACCTGGCAA---
AAAGACCTGTCAATAC
 A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T A C G T
G C T A C G T A T C A G A T C G C T G A A T G C G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T G T C A A G T C

PH0140.1_Pknox1/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AACCTGGCAA---
AAAGACCTGTCAATCC
 A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A T G C A A T C G C T G A A T G C T G A C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G A C T G A C

PH0102.1_Meis1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AACCTGGCAA---
AACGAGCTGTCAATAC
 A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T A C G T
C G T A C G T A T A C G A T C G C T G A A T C G T G A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A G A T C

PH0105.1_Meis3/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AACCTGGCAA---
AATTACCTGTCAATAC
 A C G T A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T A C G T
C G T A C T G A C G A T A C G T C T G A A T G C G A T C A G C T C T A G G C A T A G T C C G T A G C T A G C A T T G C A G T A C

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AACCTGGCAA---
-SCCTAGCAACAG
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T A C G T
A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AACCTGGCAA
--GCTGTCAA
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A
A C G T A C G T A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A

NFIX/MA0671.1/Jaspar

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AACCTGGCAA-
--NTTGGCANN
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T
A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AACCTGGCAA--
--CSTGGGAAAD
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A A C G T A C G T
A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.66
Offset:3
Orientation:forward strand
Alignment:AACCTGGCAA
---TTGGCA-
 C G T A C G T A A G T C A G T C A C G T A C T G A C T G G T A C C G T A C G T A
A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T