Information for 7-TGTTATGGCCGCCTCM (Motif 12)

C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
Reverse Opposite:
A C T G T A C G C G T A A C T G A T C G A G T C A T C G A C T G A G T C A G T C C G T A A C G T C T G A C T G A G T A C C G T A
p-value:1e-12
log p-value:-2.871e+01
Information Content per bp:1.767
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.95%
Number of Background Sequences with motif8.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.7 +/- 17.6bp
Average Position of motif in Background77.2 +/- 16.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGTTATGGCCGCCTCM
--TAATGGCGGNC---
 C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T A C G T A C G T

PH0056.1_Hoxa9/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGTTATGGCCGCCTCM
ANTAATTTTATGGCCGN----
 A C G T A C G T A C G T A C G T A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T A C G T A C G T A C G T

PH0013.1_Cdx2/Jaspar

Match Rank:3
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGTTATGGCCGCCTCM
NAATTTTATTACCNNN---
 A C G T A C G T A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T A C G T A C G T A C G T

PH0073.1_Hoxc9/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---TGTTATGGCCGCCTCM
NNAATTAATGACCNNN---
 A C G T A C G T A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:5
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----TGTTATGGCCGCCTCM
NGANTTTTATGGCTCN----
 A C G T A C G T A C G T A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-TGTTATGGCCGCCTCM
NTTTTATGAC-------
 A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGTTATGGCCGCCTCM
TTTTATGGCTN-----
 C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T A C G T A C G T A C G T A C G T A C G T

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---TGTTATGGCCGCCTCM
NAATTTTATTACCTNN---
 A C G T A C G T A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:TGTTATGGCCGCCTCM--
----CTGGCAGNCTGCCA
 C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

HOXA10/MA0899.1/Jaspar

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGTTATGGCCGCCTCM
NTTTTATTACN------
 A C G T C G A T A C T G A G C T G A C T G T C A C G A T A C T G C T A G A G T C A T G C A C T G A T G C A G T C C G A T A T G C G T A C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C A C G T A C G T A C G T A C G T A C G T A C G T