Information for 7-MCAGCCAWTCWSCRAC (Motif 9)

G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A C T G A T C G C G A T A C T G C G T A C G T A A C G T A C T G A C T G A T G C A C G T A C T G A C G T
p-value:1e-10
log p-value:-2.489e+01
Information Content per bp:1.864
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 29.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL004.1_CCAAT-box/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-MCAGCCAWTCWSCRAC
ACTAGCCAATCA-----
 A C G T G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:MCAGCCAWTCWSCRAC
--AGCCAATCGG----
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---MCAGCCAWTCWSCRAC
AAATGGACCAATCAG----
 A C G T A C G T A C G T G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:MCAGCCAWTCWSCRAC
SCTGTCAVTCAV----
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:5
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:MCAGCCAWTCWSCRAC--
TGGACCAATCAGCACTCT
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:MCAGCCAWTCWSCRAC
NCTGTCAATCAN----
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:MCAGCCAWTCWSCRAC
BCAGACWA--------
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----MCAGCCAWTCWSCRAC
TACGCCCCGCCACTCTG----
 A C G T A C G T A C G T A C G T A C G T G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T A C G T A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:MCAGCCAWTCWSCRAC-
CGACCCAATCAACGGTG
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C A C G T
A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIC/MA0161.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:MCAGCCAWTCWSCRAC
--TGCCAA--------
 G T C A A G T C G T C A A T C G A G T C A G T C C G T A G C A T A C G T A G T C C G T A A T G C A G T C T C A G C G T A A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T