Information for 3-CCGCCATGGSGGCGGC (Motif 4)

G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
Reverse Opposite:
A T C G A G T C A T G C A C T G A T G C A T G C A T C G A G T C G T A C C G T A A C G T C T A G A T C G A G T C C A T G C A T G
p-value:1e-16
log p-value:-3.914e+01
Information Content per bp:1.787
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.08%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets50.3 +/- 26.4bp
Average Position of motif in Background60.4 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATGGSGGCGGC
GTCCGCCATTA-------
 A C G T A C G T G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CCGCCATGGSGGCGGC
TTGCCATGGCAACN--
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATGGSGGCGGC
GTTGCCATGGCAACCG-
 A C G T G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CCGCCATGGSGGCGGC
GTTGCCATGGCAACM--
 A C G T G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C T G A C A C G T A C G T

TFAP2B(var.3)/MA0813.1/Jaspar

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCGCCATGGSGGCGGC
-TGCCCTNAGGGCA--
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T G A C T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:6
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCGCCATGGSGGCGGC
-TGCCCTGAGGGCA--
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCGCCATGGSGGCGGC
-TGCCCTGAGGGCA--
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A C G T G C A T A T C G A G T C A G T C A G T C A G C T A T C G T C G A T C A G A C T G A C T G A T G C C G T A A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATGGSGGCGGC
GTTGCCATGGNAAC---
 A C G T G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C A C G T A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCGCCATGGSGGCGGC
-CAAGATGGCGGC---
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A C G T T A G C C G T A C T G A T A C G C G T A A C G T A C T G A C T G A G T C T A C G C T A G G T A C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CCGCCATGGSGGCGGC
TTGCCATGGCAACC--
 G A T C G T A C A C T G A T G C A G T C C G T A A C G T A C T G C T A G A T G C T A C G T A C G A G T C A T C G A C T G A T G C
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T