Information for 5-GAGCCTGACCHGACTA (Motif 13)

A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
Reverse Opposite:
C G A T T C G A A T C G A G C T A G T C C G A T A C T G A C T G A G C T A T G C G T C A C T A G A C T G T G A C C G A T A G T C
p-value:1e-9
log p-value:-2.274e+01
Information Content per bp:1.768
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets54.6 +/- 25.7bp
Average Position of motif in Background50.6 +/- 12.8bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGCCTGACCHGACTA-
-NNNNTGACCCGGCGCG
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G

PB0157.1_Rara_2/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GAGCCTGACCHGACTA-
-NNCNTGACCCCGCTCT
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.57
Offset:3
Orientation:forward strand
Alignment:GAGCCTGACCHGACTA
---CCTCACCTG----
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGCCTGACCHGACTA
TGACANARRCCAGRC--
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTGACCHGACTA
TGACCTTGACCT-----
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GAGCCTGACCHGACTA
TGACCTTGACCT-----
 A C G T A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:GAGCCTGACCHGACTA
-----TGACCT-----
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:GAGCCTGACCHGACTA
-----TGACCTYA---
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:forward strand
Alignment:GAGCCTGACCHGACTA----
---CAAATCCAGACATCACA
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:GAGCCTGACCHGACTA
--------CCAGACAG
 A C T G C G T A A C T G A G T C A G T C A C G T A T C G C T G A A G T C A G T C G C T A A C T G C T G A A T G C A G C T C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G