Information for 16-CTCACAAGCG (Motif 20)

A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
Reverse Opposite:
T A G C T A C G G A T C G A C T C G A T A T C G C G A T A T C G C G T A T A C G
p-value:1e-9
log p-value:-2.143e+01
Information Content per bp:1.659
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif2.45%
Number of Background Sequences with motif210.5
Percentage of Background Sequences with motif0.48%
Average Position of motif in Targets49.2 +/- 27.9bp
Average Position of motif in Background49.0 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:1
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTCACAAGCG
AGCCACTCAAG--
 A C G T A C G T A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:2
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTCACAAGCG-
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTCACAAGCG
GTCACATGAY
 A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
T C A G G A C T G T A C G T C A A G T C T C G A G C A T A T C G T C G A A G T C

PB0168.1_Sox14_2/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CTCACAAGCG---
CTCACACAATGGCGC
 A C G T A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G A C G T A C G T A C G T
A G T C A C G T A G T C T C G A T A G C C G T A A T G C G T C A G T C A G C A T C T A G T C A G G T A C A C T G A T G C

PB0208.1_Zscan4_2/Jaspar

Match Rank:5
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----CTCACAAGCG-
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Mitf/MA0620.1/Jaspar

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CTCACAAGCG
GGTCACGTGG-
 A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G A C G T

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTCACAAGCG
--AACAAAGG
 A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CTCACAAGCG
RNAACAATGG
 A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

ZEB1/MA0103.2/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CTCACAAGCG
CCTCACCTG--
 A C G T A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CTCACAAGCG
-TCAGTCTT-
 A T G C G C A T A T G C G C T A T A G C G C T A C T G A C T A G A T G C A T C G
A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T