Information for 3-GGAKRTGWCGCMRCGC (Motif 12)

A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
Reverse Opposite:
A T C G A G T C A T C G A G C T A C G T A C T G A G T C A C T G C G A T A G T C C G T A A G T C G T A C A C G T A G T C A G T C
p-value:1e-12
log p-value:-2.965e+01
Information Content per bp:1.854
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.64%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.3 +/- 30.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0117.1_Eomes_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGAKRTGWCGCMRCGC
GCGGAGGTGTCGCCTC--
 A C G T A C G T A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C A C G T A C G T

Atf1/MA0604.1/Jaspar

Match Rank:2
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
----ATGACGTA----
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T A C G T A C G T A C G T

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GGAKRTGWCGCMRCGC-
-NNCNTGACCCCGCTCT
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C A C G T
A C G T A C G T T G C A T G A C C A G T G A C T T C A G C G T A G T A C G T A C A T G C T A G C T C A G G T A C C A G T G T A C C A G T

CREB1/MA0018.2/Jaspar

Match Rank:4
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
-----TGACGTCA---
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A A T G C C T A G A G C T G T A C C G T A A C G T A C G T A C G T

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
---NATGTTGCAA---
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T C T A G T C G A C G A T C T A G G C A T C A G T C T A G G A T C C G T A G T C A A C G T A C G T A C G T

Atf3/MA0605.1/Jaspar

Match Rank:6
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
---GATGACGT-----
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T A T C G C T G A A C G T A C T G C G T A A G T C C T A G G A C T A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
--GGATGATGCAATA-
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A A C G T

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGAKRTGWCGCMRCGC
---GATGACGTCA---
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T T A C G T C G A G A C T A C T G C T G A A G T C T C A G G A C T T G A C C T G A A C G T A C G T A C G T

CRE(bZIP)/Promoter/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:GGAKRTGWCGCMRCGC
----GTGACGTCACCG
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C
A C G T A C G T A C G T A C G T T A C G A G C T A T C G C T G A A G T C C T A G A G C T A T G C C T G A A T G C T A G C T A C G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GGAKRTGWCGCMRCGC-
-NNNNTGACCCGGCGCG
 A C T G A C T G C G T A C A G T C T A G A C G T A C T G C G T A A G T C A C T G A G T C T G C A T C G A A T G C C T A G A T G C A C G T
A C G T C G A T T C G A T A G C A T C G A G C T T C A G G T C A G T A C G T A C A G T C T A C G T C A G G T A C A C T G G T A C A C T G