Information for 5-CCGCCGCCATGGCGGC (Motif 4)

A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
Reverse Opposite:
A T C G A T G C G T A C A C T G A G T C A G T C C G T A A C G T A C T G C T A G A G T C A C T G A T C G A G T C A T C G A T C G
p-value:1e-20
log p-value:-4.737e+01
Information Content per bp:1.806
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.9 +/- 8.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGCGGC
-GTCCGCCATTA----
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCGCCGCCATGGCGGC
CGGTTGCCATGGCAAC
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

YY1(Zf)/Promoter/Homer

Match Rank:3
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC
--GCCGCCATCTTG--
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC
-KGTTGCCATGGCAAC
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGCGGC
-NGTTGCCATGGCAA-
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC
--GTTGCCATGGNAAC
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX3/MA0798.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC-
-CGTTGCCATGGCAACN
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

YY1/MA0095.2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC
--GCNGCCATCTTG--
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CCGCCGCCATGGCGGC-
-CGTTGCCATGGCAACN
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C A C G T
A C G T A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCGCCGCCATGGCGGC-
-CGTTGCCATGGCAACG
 A T G C T A G C C T A G A T G C T G A C A C T G A G T C G T A C C G T A A C G T T A C G C T A G A G T C A C T G A T C G A T G C A C G T
A C G T A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G