Information for 18-GACAGAMMGGGCC (Motif 17)

A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C A G T C A C G T C A T G C G A T A G T C A C G T A C T G A C G T A G T C
p-value:1e-7
log p-value:-1.827e+01
Information Content per bp:1.885
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif7.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets66.2 +/- 23.2bp
Average Position of motif in Background25.5 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0137.1_Irf3_2/Jaspar

Match Rank:1
Score:0.63
Offset:1
Orientation:forward strand
Alignment:GACAGAMMGGGCC--
-GGAGAAAGGTGCGA
 A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--GACAGAMMGGGCC
ATGCCAGACN-----
 A C G T A C G T A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GACAGAMMGGGCC
-CCAGACAG----
 A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GACAGAMMGGGCC
-CCAGACRSVB--
 A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----GACAGAMMGGGCC
AGGTGNCAGACAG----
 A C G T A C G T A C G T A C G T A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GACAGAMMGGGCC
AGGTGHCAGACA-----
 A C G T A C G T A C G T A C G T A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----GACAGAMMGGGCC
CAAATCCAGACATCACA
 A C G T A C G T A C G T A C G T A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.52
Offset:5
Orientation:forward strand
Alignment:GACAGAMMGGGCC
-----AGCGCGCC
 A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
A C G T A C G T A C G T A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:GACAGAMMGGGCC-
------CTAGGCCT
 A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GACAGAMMGGGCC
TTGACAG--------
 A C G T A C G T A C T G G T C A A G T C C G T A A C T G C G T A G T A C T G C A A C T G C T A G A C T G A G T C A G T C
G C A T G C A T A T C G T G C A A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T