Information for 15-CGCAGCAGCAAAC (Motif 15)

G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
Reverse Opposite:
A T C G A C G T A C G T A C G T A C T G A G T C A C G T A C T G A G T C A C G T A C T G A G T C A C T G
p-value:1e-8
log p-value:-1.869e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets25.5 +/- 19.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NHLH1/MA0048.2/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CGCAGCAGCAAAC
CGCAGCTGCG---
 G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCAGCAAAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCAGCAAAC
CCACACAGCAGGAGA-
 A C G T A C G T A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CGCAGCAGCAAAC
GAGCACAGCAGGACA-
 A C G T A C G T A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGCAGCAGCAAAC
NNNNAGCAGCTGCTGAN
 A C G T A C G T A C G T A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCAGCAGCAAAC
CACAGCAGGGGG-
 G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CGCAGCAGCAAAC-
DCHCAGCAGGRGGCC
 A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGCAGCAGCAAAC
--CAGCTGNT---
 G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
A C G T A C G T G T A C C G T A A C T G T G A C C G A T A C T G A G T C G A C T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CGCAGCAGCAAAC
AGCAGCTGCTNN-
 G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCAGCAGCAAAC
NNACAGCTGC----
 A C G T G T A C A C T G A G T C C G T A A C T G A G T C C G T A A C T G A G T C C G T A C G T A G T C A A T G C
C G T A T G A C T C G A A G T C C G T A A T C G A T G C A C G T A C T G A G T C A C G T A C G T A C G T A C G T