Information for 4-CTGTCCATGGTGCTGA (Motif 11)

A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
Reverse Opposite:
A G C T A G T C C G T A A C T G T A G C C G T A A G T C A G T C C G T A G C A T A C T G A C T G T G C A A G T C C G T A C T A G
p-value:1e-9
log p-value:-2.287e+01
Information Content per bp:1.840
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.2 +/- 16.5bp
Average Position of motif in Background44.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST/MA0138.2/Jaspar

Match Rank:1
Score:0.92
Offset:-4
Orientation:reverse strand
Alignment:----CTGTCCATGGTGCTGA-
GGCGCTGTCCATGGTGCTGAA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A A C G T
C T A G A T C G G T A C C A T G A G T C C G A T T A C G C A G T A G T C A G T C C T G A C G A T C T A G T A C G G A C T T A C G A T G C A G C T C T A G T C G A G T C A

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----CTGTCCATGGTGCTGA
GGAGCTGTCCATGGTGCTGA
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
C T A G A T C G G T C A C A T G A G T C G A C T T A C G C A G T A G T C A G T C C T G A C G A T C T A G A T C G G A C T A T C G A G T C G A C T C T A G T C G A

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
BNTGDCCTTG-------
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
A T G C C A T G A C G T C T A G C T G A T G A C T G A C G A C T G C A T A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGACCTTTG------
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T A C G T A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
CTGTTCCTGG------
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
-TGACCTTGAV-----
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
A C G T G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
-TGACCTTGAN-----
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
A C G T G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CTGTCCATGGTGCTGA
GCTGACCTTGAACTN--
 A C G T A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTGTCCATGGTGCTGA
-TGACCTTTGCCCTA-
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
A C G T A G C T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G T G A C G A T C G A T C G A C T T C G A A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTGTCCATGGTGCTGA
NTGACCTTGA------
 A G T C A C G T A C T G A C G T A G T C A G T C C G T A G C A T A C T G A C T G A C G T A T C G A G T C A C G T C T A G C T G A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A A C G T A C G T A C G T A C G T A C G T A C G T