Information for 11-CCAGCGATCA (Motif 10)

A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A
Reverse Opposite:
A C G T A C T G C T G A C G A T A G T C A T C G A G T C A C G T A C T G A T C G
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.877
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.40%
Number of Background Sequences with motif49.3
Percentage of Background Sequences with motif0.11%
Average Position of motif in Targets44.4 +/- 26.9bp
Average Position of motif in Background42.1 +/- 26.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CCAGCGATCA-
GYCATCMATCAT
 A C G T A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0118.1_Esrra_2/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCAGCGATCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCAGCGATCA--
CCATCAATCAAA
 A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CCAGCGATCA
TCATCAATCA
 A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PB0099.1_Zfp691_1/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---CCAGCGATCA----
CGAACAGTGCTCACTAT
 A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T
A G T C C A T G G C T A T C G A G A T C T C G A A C T G C G A T C T A G G T A C A G C T A G T C T G C A A G T C G C A T C T G A C G A T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CCAGCGATCA
-CAGCC----
 A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CCAGCGATCA
GCCATAAATCA
 A C G T A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

GLI2/MA0734.1/Jaspar

Match Rank:8
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCAGCGATCA-----
---GCGACCACACTG
 A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T G A C C A T G T G C A A G T C A T G C G T C A A T G C T G C A G T A C C G A T C T A G

Dux/MA0611.1/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CCAGCGATCA-
---CCAATCAA
 A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

PB0195.1_Zbtb3_2/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CCAGCGATCA
NNNNTGCCAGTGATTG
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A A C T G A T G C C T A G G C T A A G C T A G T C C G T A
G C T A G C A T C G A T G A T C G A C T T C A G T G A C T A G C C G T A A C T G A G C T C A T G C G T A A G C T C G A T T C A G