Information for 5-CTAATGGCKGACG (Motif 6)

A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
Reverse Opposite:
A G T C A C T G A C G T A G T C T G C A A C T G G T A C A G T C G T C A A C G T A C G T C T G A C T A G
p-value:1e-13
log p-value:-3.163e+01
Information Content per bp:1.828
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.96%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets62.9 +/- 20.8bp
Average Position of motif in Background71.9 +/- 21.1bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:reverse strand
Alignment:CTAATGGCKGACG
-TAATGGCGGNC-
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTAATGGCKGACG
CTAATKGV-----
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGGCKGACG
GTTAATGGCC----
 A C G T A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CTAATGGCKGACG
NTAATTGN-----
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

VENTX/MA0724.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAATGGCKGACG
CTAATCGNT----
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
G A T C A C G T C G T A C G T A C A G T A G T C C T A G A C T G G C A T A C G T A C G T A C G T A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CTAATGGCKGACG
GCTAATTGCT----
 A C G T A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A T C G G A T C G C A T C G T A C T G A C G A T A G C T C T A G A T G C A G C T A C G T A C G T A C G T A C G T

HOXB3/MA0903.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGGCKGACG
NNTAATTANN----
 A C G T A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A C T G A G T C C G A T C T G A C T G A A G C T A C G T C T G A A T C G G A C T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CTAATGGCKGACG
NTAATTGG-----
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTAATGGCKGACG
-AAAATGCTGACT
 A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A C G T C G T A C G T A G C T A C G T A G A C T A T C G G T A C G A C T C A T G C T G A A T G C C A G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTAATGGCKGACG
GKTAATGR------
 A C G T A G T C A G C T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C T G G T C A G T A C C T A G
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T