Information for 7-SYCMWGCCMATCRGCT (Motif 13)

A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
Reverse Opposite:
G T C A C T A G A G T C A G T C A C T G C G T A A C G T A C G T A C T G A C T G A G T C C G A T A C T G C T A G C T G A T A C G
p-value:1e-9
log p-value:-2.115e+01
Information Content per bp:1.847
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 30.2bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.71
Offset:4
Orientation:forward strand
Alignment:SYCMWGCCMATCRGCT
----AGCCAATCGG--
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

NFYB/MA0502.1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-SYCMWGCCMATCRGCT
AAATGGACCAATCAG--
 A C G T A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

NFYA/MA0060.2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:SYCMWGCCMATCRGCT----
--TGGACCAATCAGCACTCT
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:SYCMWGCCMATCRGCT
-ACTAGCCAATCA---
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T A C G T

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:5
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:SYCMWGCCMATCRGCT-
---NTGCCCTTGGGCGN
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C A T T C A G G T A C G A T C G A T C C G A T G A C T C T A G C T A G C A T G A G T C C T A G T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.59
Offset:2
Orientation:forward strand
Alignment:SYCMWGCCMATCRGCT
--SCTGTCAVTCAV--
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
A C G T A C G T T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:SYCMWGCCMATCRGCT
--NCTGTCAATCAN--
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
A C G T A C G T T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

PH0026.1_Duxbl/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:SYCMWGCCMATCRGCT---
--CGACCCAATCAACGGTG
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A G T C C T A G C T G A A G T C A G T C A G T C G T C A G T C A A G C T A G T C C G T A C T G A A G T C T A C G T C A G G C A T T A C G

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:SYCMWGCCMATCRGCT
----TGCCAA------
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T
A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:SYCMWGCCMATCRGCT-
---NTGCCCANNGGTNA
 A T G C A G C T A G T C G T A C C G T A A C T G A G T C A G T C G T C A C G T A A C G T A G T C C T A G A C T G A G T C A C G T A C G T
A C G T A C G T A C G T T G A C G C A T T C A G G T A C G A T C A G T C C G T A T A C G T C G A C T A G T C A G G A C T C A T G C T G A