Information for 3-CYTGGGAADTCCCCWY (Motif 3)

A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
Reverse Opposite:
C T A G G C A T C A T G A C T G A C T G C T A G T G C A G C A T A C G T A G C T G A T C A G T C G T A C G C T A T C G A T A C G
p-value:1e-22
log p-value:-5.279e+01
Information Content per bp:1.562
Number of Target Sequences with motif47.0
Percentage of Target Sequences with motif5.79%
Number of Background Sequences with motif408.6
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets49.1 +/- 25.2bp
Average Position of motif in Background47.9 +/- 23.8bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
---GGGAAATCCCCN-
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T

MF0003.1_REL_class/Jaspar

Match Rank:2
Score:0.85
Offset:4
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
----GGAAATCCCC--
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.84
Offset:2
Orientation:forward strand
Alignment:CYTGGGAADTCCCCWY
--AGGGGATTCCCCT-
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T T G C A T C A G A C T G C A T G C T A G T G C A G C A T G A C T G A T C G T A C G A T C G A T C A G C T A C G T

REL/MA0101.1/Jaspar

Match Rank:4
Score:0.83
Offset:4
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
----GGAAANCCCC--
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T

RELA/MA0107.1/Jaspar

Match Rank:5
Score:0.81
Offset:4
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
----GGAAATTCCC--
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:6
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
--AGGGGATTCCCCT-
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T T G C A C T A G C A T G C A T G C T A G T C G A G C A T A G C T G A T C G T A C T A G C G A T C A C G T A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:7
Score:0.79
Offset:2
Orientation:forward strand
Alignment:CYTGGGAADTCCCCWY
--GGGGGAATCCCC--
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.78
Offset:4
Orientation:forward strand
Alignment:CYTGGGAADTCCCCWY
----GGAAATTCCC--
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A C G T A C G T A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CYTGGGAADTCCCCWY
CSTGGGAAAD------
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C
A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0201.1_Zfp281_2/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CYTGGGAADTCCCCWY----
---AGGAGACCCCCAATTTG
 A T G C A G C T C G A T C A T G C T A G C T A G T C G A T G C A C G T A A C G T G A T C T G A C G T A C G T A C C G T A G A T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G T A C A T G C A T G C G T A C A T G C T G A T G A C G T A C T A G C A G T C G T A C G C T A G C T A C G A T C G A T C G A T T C A G