Information for 14-GGGATKACSA (Motif 21)

A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
Reverse Opposite:
A C G T A T G C A T C G A C G T G T C A C G T A A C G T A G T C A G T C A G T C
p-value:1e-7
log p-value:-1.736e+01
Information Content per bp:1.904
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.86%
Number of Background Sequences with motif17.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets49.4 +/- 28.3bp
Average Position of motif in Background45.1 +/- 35.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PITX3/MA0714.1/Jaspar

Match Rank:1
Score:0.76
Offset:0
Orientation:reverse strand
Alignment:GGGATKACSA
GGGATTANN-
 A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
C T A G T C A G C A T G G T C A A G C T G A C T C G T A C T G A A T C G A C G T

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GGGATKACSA
NGGGATTA---
 A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
T G A C C T A G C T A G T C A G G T C A G C A T G A C T G C T A A C G T A C G T A C G T

Pitx1/MA0682.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGGATKACSA
GGGATTAA--
 A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
C A T G C T A G C T A G G T C A C G A T A G C T C G T A C T G A A C G T A C G T

PH0137.1_Pitx1/Jaspar

Match Rank:4
Score:0.75
Offset:-5
Orientation:forward strand
Alignment:-----GGGATKACSA--
TTAGAGGGATTAACAAT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A A C G T A C G T
G A C T A C G T T C G A C T A G C T G A T C A G C T A G C A T G G T C A A C G T G A C T C G T A C T G A G T A C C T G A G T C A G C A T

GSC/MA0648.1/Jaspar

Match Rank:5
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGGATKACSA
NNGGATTAGN-
 A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:6
Score:0.74
Offset:-1
Orientation:reverse strand
Alignment:-GGGATKACSA
VRGGATTARN-
 A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
T C G A C T A G C T A G C T A G G T C A A C G T C G A T C G T A C T G A T A G C A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:7
Score:0.73
Offset:0
Orientation:forward strand
Alignment:GGGATKACSA
RGGATTAR--
 A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GGGATKACSA
GNGGATTAGN-
 A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T

PH0139.1_Pitx3/Jaspar

Match Rank:9
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---GGGATKACSA---
AGGGGGATTAGCTGCC
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A A C G T A C G T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:10
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:GGGATKACSA
-GGATTAGC-
 A C T G A C T G A C T G C G T A A C G T A C G T C G T A A T G C A T C G C G T A
A C G T T C A G T A C G T G C A C A G T G C A T C G T A C T A G T A G C A C G T