Information for 17-GCGCCSAGCCAAT (Motif 19)

A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
Reverse Opposite:
G T C A C G A T A C G T A C T G C T A G A T G C A C G T A T G C A T C G A T C G T A G C A C T G G T A C
p-value:1e-9
log p-value:-2.156e+01
Information Content per bp:1.700
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif32.6
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets46.1 +/- 30.1bp
Average Position of motif in Background55.1 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:6
Orientation:forward strand
Alignment:GCGCCSAGCCAAT---
------AGCCAATCGG
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GCGCCSAGCCAAT--
---ACTAGCCAATCA
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCGCCSAGCCAAT
TGGCACCATGCCAA-
 A C G T A C G T A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCGCCSAGCCAAT---
TACGCCCCGCCACTCTG
 A C G T A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T A C G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCGCCSAGCCAAT---
-AAATGGACCAATCAG
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T A C G T A C G T A C G T
A C G T T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:GCGCCSAGCCAAT
------TGCCAA-
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GCGCCSAGCCAAT
----CGTGCCAAG
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GCGCCSAGCCAAT
CTTGGCANNNTGCCAA-
 A C G T A C G T A C G T A C G T A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A A C G T

INSM1/MA0155.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCSAGCCAAT
CGCCCCCTGACA--
 A C G T A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCGCCSAGCCAAT
--AGCGCGCC---
 A C T G T G A C A T C G A T G C T A G C T A C G T G C A A T C G A G T C G T A C T C G A C G T A A C G T
A C G T A C G T T G C A T A C G T A G C T C A G T G A C A C T G A G T C A G T C A C G T A C G T A C G T