Information for 15-CTAATGGCAGCCT (Motif 16)

A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G G T A C C G A T A C T G A G T C A G T C C G T A A C G T G A C T C G T A T A C G
p-value:1e-9
log p-value:-2.164e+01
Information Content per bp:1.879
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif2.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.8 +/- 20.7bp
Average Position of motif in Background31.2 +/- 21.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTAATGGCAGCCT
-TAATGGCGGNC-
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTAATGGCAGCCT
GTTAATGGCC----
 A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T A C G T A C G T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTAATGGCAGCCT---
ACTATGCCAACCTACC
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CTAATGGCAGCCT
CTAATKGV-----
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C A C G T A C G T A C G T A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:5
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CTAATGGCAGCCT
NTAATTGN-----
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CTAATGGCAGCCT
-TNNGGGCAG---
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTAATGGCAGCCT
GKTAATGR------
 A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTAATGGCAGCCT
NTAATTGG-----
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTAATGGCAGCCT-----
----TGGCAGNCTGCCAG
 A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------CTAATGGCAGCCT
ANTAATTTTATGGCCGN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C T G A C T G A G T C C G T A A C T G A G T C A G T C A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T A C G T A C G T