Information for 4-WGGGRAATTCCCC (Motif 6)

C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
Reverse Opposite:
C T A G A C T G A C T G C T A G C T G A C G T A C G A T A G C T G A C T A G T C A G T C G A T C G C A T
p-value:1e-14
log p-value:-3.271e+01
Information Content per bp:1.729
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.33%
Number of Background Sequences with motif18.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets64.7 +/- 23.7bp
Average Position of motif in Background45.8 +/- 21.9bp
Strand Bias (log2 ratio + to - strand density)0.9
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:WGGGRAATTCCCC
NGGGGATTTCCC-
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
C G T A C A T G C A T G A C T G C T A G T C G A G C A T C G A T A G C T A G T C G A T C G T A C A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:2
Score:0.84
Offset:2
Orientation:forward strand
Alignment:WGGGRAATTCCCC
--GGAAATTCCC-
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T

NFKB2/MA0778.1/Jaspar

Match Rank:3
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:WGGGRAATTCCCC
AGGGGAATCCCCT
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
T C G A C T A G C A T G C A T G C T A G C T G A C G T A A C G T G A T C G T A C G T A C A G T C A C G T

RELA/MA0107.1/Jaspar

Match Rank:4
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:WGGGRAATTCCCC
--GGAAATTCCC-
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C A C G T

MF0003.1_REL_class/Jaspar

Match Rank:5
Score:0.80
Offset:2
Orientation:reverse strand
Alignment:WGGGRAATTCCCC
--GGAAATCCCC-
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
A C G T A C G T C A T G C T A G C T G A T C G A G C T A C G A T G A T C G T A C T G A C T A G C A C G T

NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:WGGGRAATTCCCC
GGGGGAATCCCC-
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
T C A G C T A G C T A G C T A G T C A G T C G A C T G A C G A T A G T C G A T C A G T C T G A C A C G T

NFKB1/MA0105.4/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:WGGGRAATTCCCC
AGGGGAATCCCCT
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
T G C A C T A G A T C G C A T G C T A G T C G A C G T A A G C T G A T C G T A C G T A C G A T C A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.73
Offset:1
Orientation:forward strand
Alignment:WGGGRAATTCCCC
-GGGGATTTCC--
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C
A C G T A T C G A C T G C A T G C T A G G T C A C G A T C G A T C G A T A G T C G T A C A C G T A C G T

PH0053.1_Hoxa6/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:WGGGRAATTCCCC---
AAGGTAATTACCTAAT
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C A C G T A C G T A C G T
T C G A G T C A C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A T G A C G A T C G A C T G T C A C G T A C A G T

PB0204.1_Zfp740_2/Jaspar

Match Rank:10
Score:0.58
Offset:4
Orientation:forward strand
Alignment:WGGGRAATTCCCC--------
----AAATTCCCCCCGGAAGT
 C G T A C T A G C T A G C T A G C T G A C T G A C G T A C G A T A G C T G A T C G T A C G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A C T G A C T G A C A G T G C A T G A T C G A T C A G T C A G T C A T G C A T G C T A C G A T C G C T G A C T G A T C A G A G C T