Information for 19-ATAAAGMSRC (Motif 24)

C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
Reverse Opposite:
C T A G G A T C A T C G A C G T A G T C A C G T A G C T A G C T C G T A C G A T
p-value:1e-9
log p-value:-2.098e+01
Information Content per bp:1.749
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif3.89%
Number of Background Sequences with motif537.4
Percentage of Background Sequences with motif1.19%
Average Position of motif in Targets48.9 +/- 25.5bp
Average Position of motif in Background47.6 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATAAAGMSRC
NGYCATAAAWCH--
 A C G T A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGMSRC
CCAATAAAAA---
 A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATAAAGMSRC---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--ATAAAGMSRC---
GTATAAAAGGCGGGG
 A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C A C G T A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

CDX1/MA0878.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGMSRC
GCAATAAAA----
 A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
T C A G G A T C G T C A T C G A G C A T G C T A C G T A G C T A G T C A A C G T A C G T A C G T A C G T

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----ATAAAGMSRC
AAGCCATAAAA----
 A C G T A C G T A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
T C G A C T G A T C A G A G T C G T A C C G T A A C G T C G T A C G T A C G T A T C G A A C G T A C G T A C G T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGMSRC
GTCATAAAAN---
 A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T A C G T A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATAAAGMSRC
GGTAATAAAAA---
 A C G T A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXD13/MA0909.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---ATAAAGMSRC
CCAATAAAAA---
 A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
A T G C G A T C G T C A C G T A A G C T C G T A G C T A G T C A G T C A G T C A A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATAAAGMSRC
NCYAATAAAA----
 A C G T A C G T A C G T A C G T C G T A A C G T C T G A C T G A C G T A A C T G T G C A T A G C C T A G A G T C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T