Information for 8-GGACGGCGCACTC (Motif 9)

A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C
Reverse Opposite:
A C T G C T G A A C T G A C G T A C T G A G T C A C T G A G T C A G T C A C T G G C A T A T G C A G T C
p-value:1e-11
log p-value:-2.691e+01
Information Content per bp:1.934
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets46.3 +/- 24.4bp
Average Position of motif in Background63.0 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GGACGGCGCACTC
----GGCGCGCT-
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C
A C G T A C G T A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.57
Offset:5
Orientation:forward strand
Alignment:GGACGGCGCACTC--
-----AASCACTCAA
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGACGGCGCACTC----
-AGCGGCACACACGCAA
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T A C G T A C G T A C G T
A C G T C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0099.1_Zfp691_1/Jaspar

Match Rank:4
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGACGGCGCACTC----
NNNNTGAGCACTGTNNG
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T A C G T A C G T A C G T
G C T A G A C T C G T A T C A G A C G T A C T G C T G A A C T G A G T C C G T A G T A C A G C T C A T G A G C T C A G T G T A C T C A G

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:5
Score:0.55
Offset:6
Orientation:reverse strand
Alignment:GGACGGCGCACTC---
------NSCACTYVAV
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGACGGCGCACTC-
ATAAGGGCGCGCGAT
 A C G T A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T
T C G A G C A T C G T A G C T A C T A G T A C G T A C G T A G C A T C G A T G C A T C G G A T C A T C G G C T A G C A T

Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer

Match Rank:7
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGACGGCGCACTC
RGKGGGCGGAGC----
 A C G T A C G T A C G T A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C
C T G A T C A G C A G T C T A G A C T G C T A G G A T C A T C G A C T G C T G A T C A G G A T C A C G T A C G T A C G T A C G T

Sp1(Zf)/Promoter/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GGACGGCGCACTC
GGGGGCGGGGCC---
 A C G T A C G T A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C
T C A G C A T G C T A G A C T G A C T G A G T C A C T G A C T G C T A G T A C G A G T C A T G C A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:GGACGGCGCACTC---
-----AGCCACTCAAG
 A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGACGGCGCACTC-
ATAAAGGCGCGCGAT
 A C G T A C T G A T C G C G T A A G T C A C T G C T A G G T A C A C T G A G T C C G T A A G T C A G C T A G T C A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T