Information for 3-CKSCAGCCWTYTTSVG (Motif 5)

A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
Reverse Opposite:
A G T C A C T G T A G C G T C A C T G A T C A G T C G A C G T A C T A G A C T G G A T C A C G T A T C G A T G C T G A C T A C G
p-value:1e-16
log p-value:-3.914e+01
Information Content per bp:1.575
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif5.80%
Number of Background Sequences with motif570.9
Percentage of Background Sequences with motif1.26%
Average Position of motif in Targets48.7 +/- 24.7bp
Average Position of motif in Background53.5 +/- 32.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:CKSCAGCCWTYTTSVG
--GCNGCCATCTTG--
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
A C G T A C G T C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G A C G T A C G T

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:CKSCAGCCWTYTTSVG
--GCCGCCATCTTG--
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
A C G T A C G T C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G A C G T A C G T

E2F2/MA0864.1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CKSCAGCCWTYTTSVG
AAAATGGCGCCATTTT---
 A C G T A C G T A C G T A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T A C G T A C G T A C G T

YY2/MA0748.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CKSCAGCCWTYTTSVG
-GTCCGCCATTA----
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
A C G T C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T A C G T A C G T A C G T

E2F3/MA0469.2/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----CKSCAGCCWTYTTSVG
AAAAATGGCGCCATTTTT--
 A C G T A C G T A C G T A C G T A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CKSCAGCCWTYTTSVG-
-----GCTATTTTTGGM
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G A C T G C A T C G A T C T A G C A T G T G A C

Sox2/MA0143.3/Jaspar

Match Rank:7
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CKSCAGCCWTYTTSVG
------CCTTTGTT--
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CKSCAGCCWTYTTSVG
-----YCTTTGTTCC-
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C A C G T

PB0124.1_Gabpa_2/Jaspar

Match Rank:9
Score:0.56
Offset:6
Orientation:forward strand
Alignment:CKSCAGCCWTYTTSVG------
------CCGTCTTCCCCCTCAC
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G A C A G T C C A T G A C G T G A T C G C A T G A C T G A T C A G T C A T G C G T A C G A T C A G C T T A G C T G C A G A T C

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CKSCAGCCWTYTTSVG-
-----KCTATTTTTRGH
 A T G C A C T G T A C G T A G C T G C A C T A G G T A C A G T C G C A T A G C T A G T C A G C T A C G T A T C G T A G C T C A G A C G T
A C G T A C G T A C G T A C G T A C G T C A T G A G T C G A C T C G T A C G A T G C A T G C A T G C A T C G A T C T G A C A T G G T A C