Information for 2-CTATAAAAGGCGC (Motif 2)

A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
Reverse Opposite:
A T C G A T G C A C T G A T G C G A T C G C A T A G C T G C A T C G A T G T C A C G A T T G C A T A C G
p-value:1e-25
log p-value:-5.875e+01
Information Content per bp:1.573
Number of Target Sequences with motif111.0
Percentage of Target Sequences with motif13.42%
Number of Background Sequences with motif1911.6
Percentage of Background Sequences with motif4.23%
Average Position of motif in Targets49.6 +/- 22.1bp
Average Position of motif in Background48.9 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

TBP/MA0108.2/Jaspar

Match Rank:1
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CTATAAAAGGCGC--
GTATAAAAGGCGGGG
 A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.88
Offset:0
Orientation:forward strand
Alignment:CTATAAAAGGCGC--
GTATAAAAGGCGGGG
 A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C A C G T A C G T
T A C G A G C T C G T A G A C T C G T A C G T A C T G A C G T A T C A G T A C G T A G C T A C G T A C G A T C G T A C G

TATA-Box(TBP)/Promoter/Homer

Match Rank:3
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--CTATAAAAGGCGC
GNCTATAAAAGG---
 A C G T A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

MEF2D/MA0773.1/Jaspar

Match Rank:4
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAAGGCGC
ACTATAAATAGA--
 A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
C T G A G A T C G A C T G T C A C G A T G C T A C G T A G C T A A C G T C T G A T C A G G T C A A C G T A C G T

MEF2B/MA0660.1/Jaspar

Match Rank:5
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAAGGCGC
GCTATAAATAGC--
 A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
C T A G G T A C A G C T C G T A G C A T C G T A G C T A C G T A A C G T G C T A T C A G G T A C A C G T A C G T

MEF2A/MA0052.3/Jaspar

Match Rank:6
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAAGGCGC
TCTAAAAATAGA--
 A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
C A G T G A T C A G C T G C T A C G T A G C T A C G T A G C T A A G C T G T C A C T A G G T C A A C G T A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTATAAAAGGCGC
CCATATATGG---
 A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T A C G T

HOXA13/MA0650.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAAGGCGC
CCAATAAAAA----
 A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
T A G C A G T C G T C A C G T A A C G T G C T A C G T A G T C A T G C A G T C A A C G T A C G T A C G T A C G T

HOXB13/MA0901.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CTATAAAAGGCGC
CCAATAAAAC----
 A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
T A G C G A T C G T C A C G T A A G C T C G T A C G T A G T C A G T C A G T A C A C G T A C G T A C G T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTATAAAAGGCGC
NCYAATAAAA-----
 A C G T A C G T A T G C A C G T G C T A C A G T G C T A C G T A C T G A C G T A C T A G T A C G T G A C T A C G T A G C
C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T A C G T A C G T A C G T