Information for 7-RCCAATCASA (Motif 7)

C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
Reverse Opposite:
A G C T A T C G G A C T A T C G C T G A A G C T A C G T A C T G A C T G G A T C
p-value:1e-20
log p-value:-4.705e+01
Information Content per bp:1.720
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif7.40%
Number of Background Sequences with motif631.8
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets48.9 +/- 30.4bp
Average Position of motif in Background48.4 +/- 37.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFYB/MA0502.1/Jaspar

Match Rank:1
Score:0.92
Offset:-6
Orientation:forward strand
Alignment:------RCCAATCASA
AAATGGACCAATCAG-
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----RCCAATCASA
ACTAGCCAATCA--
 A C G T A C G T A C G T A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-RCCAATCASA
AGCCAATCGG-
 A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T

NFYA/MA0060.2/Jaspar

Match Rank:4
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---RCCAATCASA-----
TGGACCAATCAGCACTCT
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A A C G T A C G T A C G T A C G T A C G T
A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Dux/MA0611.1/Jaspar

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:RCCAATCASA
-CCAATCAA-
 C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-RCCAATCASA
TGCCAA-----
 A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:RCCAATCASA-
-CAAATCACTG
 C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A A C G T
A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:8
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---RCCAATCASA
SCTGTCAVTCAV-
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T

EN2/MA0642.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:RCCAATCASA
CCCAATTAGC
 C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

NFIX/MA0671.1/Jaspar

Match Rank:10
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---RCCAATCASA
CGTGCCAAG----
 A C G T A C G T A C G T C T A G A G T C A G T C C G T A T C G A A G C T A T G C C T G A T A G C T C G A
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T