Information for 2-GTTYTCAATCAGGTCC (Motif 5)

A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
Reverse Opposite:
A C T G A C T G C G T A A G T C A G T C C G A T C A T G C G T A A G C T A C G T A C T G C T G A C T G A C T G A C G T A A G T C
p-value:1e-24
log p-value:-5.571e+01
Information Content per bp:1.865
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets49.5 +/- 27.1bp
Average Position of motif in Background11.1 +/- 0.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.55
Offset:6
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
------AAYTAGGTCA
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

Dux/MA0611.1/Jaspar

Match Rank:2
Score:0.53
Offset:4
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
----CCAATCAA----
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A A C G T A C G T A C G T A C G T

PH0127.1_Nobox/Jaspar

Match Rank:3
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GTTYTCAATCAGGTCC
GNTNNCTAATTAGNNCG
 A C G T A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
T A C G C T G A C G A T C G T A T G A C A G T C G A C T C T G A C G T A G C A T A G C T C T G A T C A G A G T C A T C G T A G C A T C G

PH0150.1_Pou4f3/Jaspar

Match Rank:4
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-GTTYTCAATCAGGTCC
AGTTATTAATGAGGTC-
 A C G T A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
G C T A T C A G C A G T G C A T C G T A G A C T C G A T C G T A C G T A G A C T C A T G G T C A C T A G A C T G G A C T G A T C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:5
Score:0.51
Offset:0
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
SCTGTCAVTCAV----
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.51
Offset:10
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
----------AGGTCA
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

EN2/MA0642.1/Jaspar

Match Rank:7
Score:0.50
Offset:3
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
---CCCAATTAGC---
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC
------ATCAAGGTCA
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:9
Score:0.49
Offset:3
Orientation:forward strand
Alignment:GTTYTCAATCAGGTCC-
---TATAAGTAGGTCAA
 A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C A C G T
A C G T A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0187.1_Tcf7_2/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GTTYTCAATCAGGTCC
NNNTTTNTAATACNG---
 A C G T A C G T A C T G A C G T A G C T A G C T A G C T A G T C C G T A C T G A C G A T G A T C C G T A A C T G A C T G A C G T A G T C A G T C
C G A T C A G T C T A G C A G T C A G T C G A T T G C A A G C T G T C A C G T A C G A T C G T A G T A C T C A G C A T G A C G T A C G T A C G T